                                                                        Gene putatively regulated by attenuation in B_bacteriovorus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:197 nt.     Distance to run of Ts=0 nt.   Size=32 nt.     Delta G=-12.50 kcal/mol
Antiterminator: Size=48 nt.     Delta G=-14.30 kcal/mol
Anti-antiterminator:   Size=35 nt.     Delta G= -7.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CACTTTCTTGGCGCGAAGACCGGCCCCCACAGAGGTCAGCTTCAGCGATTCGTTTTCA
ACGTTGGCGGTGGCGGAAGTGGACAGAGTCACTTTTTCCACTTTTTCACCGGTTCCCT
CCGGTGTCAGCAGGGCGGCCATGGAGTTTACAGACAAAAGAACGGTCGCAAGGGCTGC
GATAAGACGTTTCATACAGGTCCTTTCTCGTATTGGTCCAGATAGGATTGGTTGAGGG
GGATTAATTGTCAAcccggaaaagttttgttggcagctcctgtgcggaagtttagaattttgaaagcaATG

    Bd1762 Gene: Bd1762     GI: 42523253     BI number: Bd1762     GOG: -------     Description: conserved hypothetical protei             A           A  C           C  G           T  T           T  T            TG TC        TG T  A       GC CG        CG GC       T  |       AG A  |       TG       C  A CG        AT       A  G TA       G  G       GT GT        CG        GC GT        GC        TA T  C      A  G       GC A  |       CG        AT a  |       TA        AT cG        TA        GT gT        CG       G  T aT        GT       C  T aT       A  G       GC aT        CG        GC gC        TA        TA tA        GC        GC                         TTTTTCACCGGTTCCCTCCGGTGTCAGCAGGGCGGCCATGGAGTTTACAGACAAAAGAACGGTCGCAAGGGCTGCGATAAGACGTTTCATACAGGTCCTTTCTCGTATTGGTCCAGATAGGATTGGTTGAGGGGGATTAATTGTCAAcccggaaaagttttgttggcagctcctgtgcggaagtttagaattttgaaagcaATG     ..................................................................................................................