                                                                        Gene putatively regulated by attenuation in B_bacteriovorus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:44 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G=-11.90 kcal/mol
Antiterminator: Size=39 nt.     Delta G= -9.30 kcal/mol
Anti-antiterminator:   Size=53 nt.     Delta G=-15.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGGCGTTGTTCTGCTGGGAGCCTTGGATGATGTCAGCACGGGTTTGGATGTCTTTTCC
AGTGGTGTCGTCATAGGCGGTTTCGATATTTTTCTGCAGATAGGTGCGGTAGCTGTTT
TCTTCGTCCGTGAGGATGTACATTTTGCGCAGTTTTTTGTCCTTAAGACGCTTCAGGC
GCTCGCCCTCAAAGCTGTCGCCGCGACGAAGGTAGAGTATCATCTTGTCGTTGATTTT
AACGTAAGCGTTGAAGTCGATCTTTTGATCGCCACGCAGGGTGCTTACTCGTATAGAA
ACATAATCCATTG

    Bd1818 Gene: Bd1818     GI: 42523304     BI number: Bd1818     GOG: -------     Description: hypothetical protein predicted by Glimmer/Critic CT G  C CG GC GC |  C |  T A  C       GT C  A      A  A TA       G  T TA       A  C CG        TA GC        GT |  T       GC CG        AT        AA AT        AT       T  G GC       G  |       GC A  G       CG        CG A  C       AT        AT T  C       GC        AT T  G       CG        TG C  C       GT        TA CG       C  |       TA TA       C  |       TG GC        GT        AT TG        CG        GC TA        TA        TG TA        GT        TA                         TCTTTTGATCGCCACGCAGGGTGCTTACTCGTATAGAAACATAATCCATTG     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_bacteriovorus                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:146 nt.     Distance to run of Ts=0 nt.   Size=38 nt.     Delta G= -9.79 kcal/mol Antiterminator: Size=33 nt.     Delta G= -4.10 kcal/mol Anti-antiterminator:   Size=52 nt.     Delta G= -9.00 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red Bases shared by the anti-antitermination and antitermination structures are shown in green The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case CGGCGTTGTTCTGCTGGGAGCCTTGGATGATGTCAGCACGGGTTTGGATGTCTTTTCC AGTGGTGTCGTCATAGGCGGTTTCGATATTTTTCTGCAGATAGGTGCGGTAGCTGTTT TCTTCGTCCGTGAGGATGTACATTTTGCGCAGTTTTTTGTCCTTAAGACGCTTCAGGC GCTCGCCCTCAAAGCTGTCGCCGCGACGAAGGTAGAGTATCATCTTGTCGTTGATTTT AACGTAAGCGTTGAAGTCGATCTTTTGATCGCCACGCAGGGTGCTTACTCGTATAGAA ACATAATCCATTG     Bd1818 Gene: Bd1818     GI: 42523304     BI number: Bd1818     GOG: -------     Description: hypothetical protein predicted by Glimmer/Critic   G G  C A  G TG AT C  T T  T GC CG                  TG TA                 G  A GT                  CG TA                  CG GT        TA        TA GT       A  G       GT |  T      G  G       CG |  T       AT       |  T T  T       CG       |  A GC        GC       |  C AT        TG       |  A CG        CG       T  T C  C      T  T      T  T T  |      T  A      C  T T  |      T  G      T  T T  |      T  C      T  G TA       T  |      T  C CG        AT        TG TA        TG        GC GT        AT        TA TA        GT        CG                         TTTTTTGTCCTTAAGACGCTTCAGGCGCTCGCCCTCAAAGCTGTCGCCGCGACGAAGGTAGAGTATCATCTTGTCGTTGATTTTAACGTAAGCGTTGAAGTCGATCTTTTGATCGCCACGCAGGGTGCTTACTCGTATAGAAACATAATCCATTG     ..................................................................................................................