                                                                        Gene putatively regulated by attenuation in B_bacteriovorus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:147 nt.     Distance to run of Ts=1 nt.   Size=25 nt.     Delta G= -7.00 kcal/mol
Antiterminator: Size=27 nt.     Delta G= -3.80 kcal/mol
Anti-antiterminator:   Size=47 nt.     Delta G=-11.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

acaactgaatgattgatttaattgatttttagcgagtcgctgttagttccacatttcactctcttacttattcagagagctagtctctcgttccaattaa
ggaagtctctgagacgaaatcttcgttagataaatctaagaagaatgttttttaaaaaagcctcacgacctattagtactgatcagctcaatacattgct
gtacttacaccttcagcctatcaacctcgtagtctccaaggggtctttagggggccgaagccccagtgagatctaatcttgtagtttgcttcccgcttag
ATG

    Bd1752.1 Gene: Bd1752.1     GI: 44896511     BI number: Bd1752.1     GOG: -------     Description: hypothetical protei tt a  a a  a cg cg ta ta |  g |  t |  c        t g  t      a  c c  c       at t  t       at        aa cg        gc       t  a ta        cg        at cg        at        gc ta        gt        at gc       a  |       ta a  g      g  |       ta t  a      t  |      g  | c  a      c  |       cg g  a       ta        ta at        cg        ta gc        ta        cg at        gt        ta                         atgttttttaaaaaagcctcacgacctattagtactgatcagctcaatacattgctgtacttacaccttcagcctatcaacctcgtagtctccaaggggtctttagggggccgaagccccagtgagatctaatcttgtagtttgcttcccgcttagATG     ..................................................................................................................