                                                                        Gene putatively regulated by attenuation in B_longum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:139 nt.     Distance to run of Ts=1 nt.   Size=18 nt.     Delta G=-13.70 kcal/mol
Antiterminator: Size=47 nt.     Delta G= -4.39 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gcaggagctgtcgaacggagtgagactgagggtggtcgccatgtacggatgaccaccctcagtccgcttcgcggacagctcccgccagcgggagcactta
tttgtagggaaattctccagttcaaatccgttagacagctcccgccagcgggagcctttattgattctgtaagaaagtcgactcagagcatttccagcgt
tcacccagtcgagtaagatatgttcggcactggaccgtgagccgaaacaagccgaaccgggggatgtataccgatgaccgcaaccaacgagacgctgagc
ATG

    BL0401 Gene: BL0401     GI: 23464999     BI number: BL0401     GOG: COG1670     Description: possible acetyltransferas aa c  a t  t t  c g  c a  g c  t c  t ta cg ta |  c t  a a  g a  c at        ca gc       c  g gc        gc gc        cg a  g       cg t  c       cg gc        ta ta        cg tg        gc             ctttattgattctgtaagaaagtcgactcagagcatttccagcgttcacccagtcgagtaagatatgttcggcactggaccgtgagccgaaacaagccgaaccgggggatgtataccgatgaccgcaaccaacgagacgctgagcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_longum                                                                         Characteristics of the secondary structures Terminator:    Distance to gene:197 nt.     Distance to run of Ts=2 nt.   Size=18 nt.     Delta G=-13.70 kcal/mol Antiterminator: Size=15 nt.     Delta G= -4.70 kcal/mol                                                                         Nomenclature/Definitions Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case gcaggagctgtcgaacggagtgagactgagggtggtcgccatgtacggatgaccaccctcagtccgcttcgcggacagctcccgccagcgggagcactta tttgtagggaaattctccagttcaaatccgttagacagctcccgccagcgggagcctttattgattctgtaagaaagtcgactcagagcatttccagcgt tcacccagtcgagtaagatatgttcggcactggaccgtgagccgaaacaagccgaaccgggggatgtataccgatgaccgcaaccaacgagacgctgagc ATG     BL0401 Gene: BL0401     GI: 23464999     BI number: BL0401     GOG: COG1670     Description: possible acetyltransferas            ca   g       c  g a  c       gc c  t       cg a  c       cg gc        cg gc        ta cg        cg gc        gc             acttatttgtagggaaattctccagttcaaatccgttagacagctcccgccagcgggagcctttattgattctgtaagaaagtcgactcagagcatttccagcgttcacccagtcgagtaagatatgttcggcactggaccgtgagccgaaacaagccgaaccgggggatgtataccgatgaccgcaaccaacgagacgctgagcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG1670 Acetyltransferases, including N-acetylases of ribosomal proteins ... can be seen here     ..................................................................................................................