                                                                        Gene putatively regulated by attenuation in B_longum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:161 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G= -7.70 kcal/mol
Antiterminator: Size=20 nt.     Delta G= -3.20 kcal/mol
Anti-antiterminator:   Size=58 nt.     Delta G=-21.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGAGTAGCGCACGGCCATCGCCCACACCGGGCGTGGCAAGACAGGGGAGACGGTCAGA
CGATGTGGTGTGTTGTCCGCCAGCTCCCGGGCCGCGGCACGCCATTGCACCAGCGCGT
CATGCCCGCGTTTCAGGTCTTTTTCAAGAATTACTGCCATGTATCCCATCATGGCACC
GGAGCCGGAAGATCTTCCATAATGCAAACGATGGCATACGGTGTGATGCGGAATATCG
GGGCATGTGCTACGCTCTAAATGAGAACGTATGCAAGAACGCTCCGCCATcgtcgttacggag
agttcATG

    glgP Gene: glgP     GI: 23465182     BI number: BL0597     GOG: COG0058     Description: glycogen phosphorylas TC C  C G  C A  G CG CG GC C  C C  | TG GC TG TG GC TA GC TG GC                   T GC                 A  G TA                 C  C GT                 T  C T  |       CC        GC A  |      A  A       CG G  |       CG        GC C  |       GC        CG A  |      T  |       GT G  |      T  |       AT AT       A  |      |  T CG       C  |      |  C |  C       CG       |  A TA        GC        CG GC        CG        CG GC        AT        AT                         CTTTTTCAAGAATTACTGCCATGTATCCCATCATGGCACCGGAGCCGGAAGATCTTCCATAATGCAAACGATGGCATACGGTGTGATGCGGAATATCGGGGCATGTGCTACGCTCTAAATGAGAACGTATGCAAGAACGCTCCGCCATcgtcgttacggagagttcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [G] COG0058 Glucan phosphorylase ... can be seen here     ..................................................................................................................