Gene putatively regulated by attenuation in B_longum
Characteristics of the secondary structures
Terminator: Distance to gene:3 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-20.90 kcal/mol
Antiterminator: Size=66 nt. Delta G=-10.47 kcal/mol
Anti-antiterminator: Size=38 nt. Delta G=-11.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCGGTAAATCACGAACCAAAAACGTGGCTGTTCCTCGTCAGATCGCCATGTATCTGGC
TCGCGAAATGACCAGTATGAGCCTGATGGATATTGGCCAGGTCTTTGGCGGACGCGAT
CACACCACAGTAATGCATGCCTGCACTCGAATCAGTGACCGAATGCAGCAAAAACAGG
AGATCTATAACTACGTTATGGAGCTCACGGTTCGCCTCAAGCAAAGCAACACCAACTG
AcacaacgcttctgagagacgaaaaacggcactttttggactgactttccgaaaagtgccgtttttggTTG
BL0639
Gene: BL0639 GI: 23465222 BI number: BL0639 GOG: ------- Description: hypothetical protei
CT
A G
A A
C c
C a
A c
C a
A a
A c
Cg
Gc
At
At
| c
At
A Cg
T C G a
CG A | a
AT A | g c
AT Cg t t
TA Ta c t
AT Cg at
TG C a gc
CG Gc gc
TA Cg tg
A G Ta ta
GC Ta ta
AT G a ta
GC G a ta
| A C a cg
G C A c at
A G C | cg
CG Tg gc
AT Cg gc
AT Gc cg
tttttggTTG
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