Gene putatively regulated by attenuation in B_longum
Characteristics of the secondary structures
Terminator: Distance to gene:94 nt. Distance to run of Ts=0 nt. Size=35 nt. Delta G=-10.00 kcal/mol
Antiterminator: Size=45 nt. Delta G=-14.94 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GAGGCTATTGCAACATCAGCCAATCCCGAAATCGACCTATTGCGCGAGGAAGTGCGTG
AGCTGACCGCTACGGTAGCCGGTCTGCGCACCGAACTTGAGCGACGTTGAttggcgaagcggg
acaaacaacgattctgccaagaaggtccgcgtcagttgttgtcaccgcggattgcggcagaatcattgtcgccacggctgttttcttcagtcggctcaac
ccaacttttgataatttttatttttttgatatttttgataatttttattttaggttgattcagcgaggaggcggtccacATG
BL0662
Gene: BL0662 GI: 23465245 BI number: BL0662 GOG: NOG27054 Description: hypothetical protei
gt
t t
t g
g t
a c
c a t
t c a c
gc a a
cg gt
gc at
cg cg
cg gt
ta gc
gt cg
gt gc
a g | c
a c | a
g | t c
a | t g
a | a g
cg gc
cg gt
gc cg
ta gt
tttcttcagtcggctcaacccaacttttgataatttttatttttttgatatttttgataatttttattttaggttgattcagcgaggaggcggtccacATG
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