Gene putatively regulated by attenuation in B_longum
Characteristics of the secondary structures
Terminator: Distance to gene:0 nt. Distance to run of Ts=0 nt. Size=19 nt. Delta G=-16.60 kcal/mol
Antiterminator: Size=76 nt. Delta G=-23.45 kcal/mol
Anti-antiterminator: Size=40 nt. Delta G=-10.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCGAGCGGTTCCTTGATACCTTGGGCAATCCCGAAGATGAAGAACATGATGGCATGGT
TGAGTGGGCCGAGGACCAGATGTGGGATCGTTTCACGCTGAACCGCCATCGTGAGCGT
CTGTTCCGTTGGCACAAGCACCGTGACATGATGTTGCAGTAGatggcgtggctacaatatgagcagctg
tcagcggaatagccgtttgtggcttgcgggctaggggctgaaaatgctataaatatattgctttactcggaaacgagaaaggctccaagtcgccgggggg
ctcccccggcattttTTG
BL0809
Gene: BL0809 GI: 23465384 BI number: BL0809 GOG: ------- Description: hypothetical protei
aa
g a
gc
cg
ta
cg
a a
ta
ta
tg
cg
gc
t t
t c
a c
t a
a |
t |
a |
a |
a |
t |
a |
t |
c |
g |
t |
g a |
a g a |
t g a |
cg a |
gc g |
gt ta
g g cg
c a gt
g a gc
ta | g
ta gc
| t gc c
cg | g g t
gc | g gc
gt | g gc
ta a g gc
gt tg gc
ta cg gc
ta gc cg
ta gt cg
gt gc gc
attttTTG
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