                                                                        Gene putatively regulated by attenuation in B_longum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:133 nt.     Distance to run of Ts=2 nt.   Size=36 nt.     Delta G=-25.90 kcal/mol
Antiterminator: Size=35 nt.     Delta G= -5.40 kcal/mol
Anti-antiterminator:   Size=31 nt.     Delta G= -8.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTCTGAGTCCACCGCCGCTCCGGAAGCTGCTGCTCCGGCTGCCGACGCTGCTGCTCCG
GCTGCCGACGCCAAGTGAgtcgatcgcttcgatagcgaacaattcagaacataactgaaacgtggaagcccgcagccgttgagaacg
gtgcgggcttcttcgttttttcaccatgtgaactctgccacacgagtaacacatgggtgtgcaaaagtatgcaacagagctcgcgccacaagcgcacagc
acacaccccatatggtggctttcgggccgccaaagtcaagaagaagtagctagtaATG

    ilvE Gene: ilvE     GI: 23465426     BI number: BL0852     GOG: COG0115     Description: probable branched-chain amino acid aminotransferas             a         a           c  t      g  g           a  a       ta   g       a  a       ta c  a       gc        gc t  t       at        cg ta        cg        cg cg        ta       g  | gc        ta        at cg       |  a       cg ta       |  c       gc a  a      a  g       cg g  c       at        cg c  a       cg        cg ta       a  g       gc gt       a  a       at At       g  a       at Gc        cg        gc Ta        gc        gt                         tcgttttttcaccatgtgaactctgccacacgagtaacacatgggtgtgcaaaagtatgcaacagagctcgcgccacaagcgcacagcacacaccccatatggtggctttcgggccgccaaagtcaagaagaagtagctagtaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [EH] COG0115 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase ... can be seen here     ..................................................................................................................