Gene putatively regulated by attenuation in B_longum
Characteristics of the secondary structures
Terminator: Distance to gene:114 nt. Distance to run of Ts=3 nt. Size=32 nt. Delta G=-23.20 kcal/mol
Antiterminator: Size=40 nt. Delta G= -5.40 kcal/mol
Anti-antiterminator: Size=55 nt. Delta G=-14.66 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCCGCTGTTCGCCGGCCTGGTCAAGGCCGCGCTCGACCATCAGGCGGCGCGCTGAcgca
ctttcgtgccgtgcataatatcgcggcatgatgtgctggctgccgtcatcggcgtagtgcaagacatacggtaaagacgtggtggcgaaatatctaatga
tgtttcgccaccacgtcttttttgttgtatgagcagcatgcagcatgatgtattggaaggcgacggtaaaaaattaccgtttctatggtgtgttggtagt
atgcagataacgcttagtaggccatcgcagaaagaccgaccATG
BL0873
Gene: BL0873 GI: 23465447 BI number: BL0873 GOG: ------- Description: hypothetical protei
ca
t t
gc
cg
cg
gc
tg a
c | a a
g | t g
gt g a
ta gc
cg cg
g t at
t g tg aa
gc a | t t
ta cg cg
a a at ta
g g g g at
t a a | tg
a c a | at
c a cg at
g t gc at
g a tg gc
c | | a cg
gc | a gc
cg g a gc
tg at ta
at ta gc
ta gt gc
acgtcttttttgttgtatgagcagcatgcagcatgatgtattggaaggcgacggtaaaaaattaccgtttctatggtgtgttggtagtatgcagataacgcttagtaggccatcgcagaaagaccgaccATG
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