Gene putatively regulated by attenuation in B_longum
Characteristics of the secondary structures
Terminator: Distance to gene:97 nt. Distance to run of Ts=1 nt. Size=29 nt. Delta G=-11.40 kcal/mol
Antiterminator: Size=25 nt. Delta G= -4.10 kcal/mol
Anti-antiterminator: Size=74 nt. Delta G=-16.55 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TGCAAcgcctgttcgcgcgcctcgatagccgcctgacgcttggatgcgatggtggcatcctctgcaatcgtcgcgctgttatgagcgtcgtgatgca
tcgtcttttccgagtcgccggttgttgatgccatggtgatgcccccgtttcacgagttgacgttacgcttcttacgctgccgtaacctacgttagcgtaa
cttttatgcttgtcaataccgactcgcgcgaacactatcacccaatggcggcgatactatggaatccgaagatgagaacgtcgcagcaataaagggctcg
gcgATG
BL1013
Gene: BL1013 GI: 23465582 BI number: BL1013 GOG: ------- Description: hypothetical protei
t
t g
g a
t t
tg
gc
gc
| a
| t
cg
cg
gt
cg
ta
gt
| g
| c
a c
g c
c c
c c
t g
t t
t t
t t
c c
ta c
gc a c
cg ta at
ta t c ta
| g c g gc
| t t c cg
at t t c t
cg cg gt
| a gc ta
gc | c cg
tg cg gc
at at cg
gt ta at
ta ta ta
gc gc ta
cttttatgcttgtcaataccgactcgcgcgaacactatcacccaatggcggcgatactatggaatccgaagatgagaacgtcgcagcaataaagggctcggcgATG
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