Gene putatively regulated by attenuation in B_longum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:173 nt.     Distance to run of Ts=0 nt.   Size=36 nt.     Delta G=-17.20 kcal/mol
Antiterminator: Size=17 nt.     Delta G= -5.70 kcal/mol
Anti-antiterminator:   Size=55 nt.     Delta G=-21.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGGCGTTCTCCTTCTCACGCAGACGGGCTTTGGCGGCCTTGGCGCTGGCCCTGCGGTC
CACCGGAACCAGCGGACGGATACCGGCGGCCTGAGCCTGCTTCATcttcggggtaggacggcctttt
ttctcagaaggattggcggccttcttcggggcctgctcaacaggagcctggacctcttcttttttcttaaacggattccatgtcatgctttgaggttacg
gtgacgttcagacacttgtacactggcgcagccattgcaatgacgccgctcacacatatataaaggaggaccatcATG

    BL1072


Gene: BL1072     GI: 23465641     BI number: BL1072     GOG: COG0624     Description: widely conserved protein in peptidase or deacetlylase famil


  C
A  C
 CG
 CG
|  A
 TA
 GC
 GC
|  A
 CG
 GC
 TG
 CG                  ct
C  A                T  t
C  |                A  c
G  |                 Cg
 GC                  Tg
 TG                  Tg
 CG                  Cg
|  A                 Gt
G  T                 Ta
C  A                 Cg
 GC        TG        Cg
 GC       C  A      G  a
 TG        CG       A  c
 TG        GC       G  |
|  C       GC       T  |
 CG       |  T       Cg
 CG        CG        Cg
 GC        GC        Gc
 GC        GT        Gc
                        ttttttctcagaaggattggcggccttcttcggggcctgctcaacaggagcctggacctcttcttttttcttaaacggattccatgtcatgctttgaggttacggtgacgttcagacacttgtacactggcgcagccattgcaatgacgccgctcacacatatataaaggaggaccatcATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases ... can be seen here

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