Gene putatively regulated by attenuation in B_longum
Characteristics of the secondary structures
Terminator: Distance to gene:132 nt. Distance to run of Ts=0 nt. Size=26 nt. Delta G=-23.40 kcal/mol
Antiterminator: Size=40 nt. Delta G= -5.00 kcal/mol
Anti-antiterminator: Size=14 nt. Delta G= -3.30 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CAGCCCATCGCTATGGAGGAAGGCCTGACCTTCGCTGTGCGTGAAGGTGGCCACACCG
TCGGCTCCGGTCGTGTGACCAAGATCCTCGCCTGAttttcatcagacaagaatcttcgcttgaactagcgttat
aggaaatccccttcgaggaaactcggaggggattttctataaccgcagcaggatatggatatgtaccacgacttccggcctggatgcgctagtgttgctt
ttcaatagataaacggactgctgcactgcgaggatatgacactgatggcaggccgggaaagaaggtcgATG
BL1096
Gene: BL1096 GI: 23465665 BI number: BL1096 GOG: ------- Description: hypothetical protei
at
a c
a c
gc
gc
at
t |
a |
t |
t |
g |
c |
g |
a | aa
t | g a
c | gc
a | at
at gc
gc cg
aa tg tg
g c ta ta
t t cg cg
ta g | cg
cg cg cg
gc ta cg
cg ta ta
ttttctataaccgcagcaggatatggatatgtaccacgacttccggcctggatgcgctagtgttgcttttcaatagataaacggactgctgcactgcgaggatatgacactgatggcaggccgggaaagaaggtcgATG
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