                                                                        Gene putatively regulated by attenuation in B_longum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:182 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G=-20.60 kcal/mol
Antiterminator: Size=41 nt.     Delta G=-10.30 kcal/mol
Anti-antiterminator:   Size=26 nt.     Delta G=-12.50 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

caaaCGGGCTGTAGCGCAGCTTGGTAGCGCGCTTCGTTCGGGACGAAGAGGCCGCGGGT
TCAAATCCCGCCAGCCCGACAActggaccggattgttgagaaatcaacaatccggtttttcgtttcctgtcccaacaatcaaac
caagcgatcgaacagcggtaaacaacccgccgcacacagcgacaaaccacatcacggcaagcccccgtatttgttggcggaccaccgtaatatatcgctc
gaatcaatcgattgccgcactgtttttgtaagtaatactgaagtaattagaggaaccATG

    BL1652 Gene: BL1652     GI: 23466200     BI number: BL1652     GOG: COG2814     Description: AraJ-like protein probably involved in transport of arabinose polymer            GA           C  C           C  A           C  A            Gc            At            Cg            Cg   A       |  a       aa C  A      G  c      g  a T  A      C  c       at T  T       Cg        gc GC        Cg        ta GC        Ta        ta GC        At        gc CG       |  t       ta GC       |  g       ta |  C       At        at C  A       At        gc CG        Cg        gc GC        Ta        cg GC        Tg        cg                         tttttcgtttcctgtcccaacaatcaaaccaagcgatcgaacagcggtaaacaacccgccgcacacagcgacaaaccacatcacggcaagcccccgtatttgttggcggaccaccgtaatatatcgctcgaatcaatcgattgccgcactgtttttgtaagtaatactgaagtaattagaggaaccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [G] COG2814 Arabinose efflux permease ... can be seen here     ..................................................................................................................