                                                                        Gene putatively regulated by attenuation in B_floridanus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:194 nt.     Distance to run of Ts=3 nt.   Size=28 nt.     Delta G= -8.50 kcal/mol
Antiterminator: Size=60 nt.     Delta G=-14.10 kcal/mol
Anti-antiterminator:   Size=44 nt.     Delta G= -5.20 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gaaatttattattttaaagtatgttaagtattaaaaatatatctttattaggatgtatgtatttgatatagtatatatgtaaatgtgctatgtgtatgtt
tttatgtaacgtatttattgaaattttttgtttaaatgaacgcgttaattttaataaaaatatatttaaagtgatttgatgagattatttgagatatatt
tgttgattatttgtcgaattttaatgtgatagtagttacataatcgaatattacatagtgctttatttgttgagaatcttataataattagagagctatt
ATG

    atpB Gene: atpB     GI: 33519485     BI number: Bfl002     GOG: COG0356     Description: ATP synthase subunit            at           t  t            ta            tg            cg            ta            at            tg   t        at t  a       ta g  a       at tg       |  g at       |  t ta       a  a gt        at Gt        at Ta        at |  a       tg        gt A  a       ta       t  a ta        at       a  a ta        ta        ta at        gt        at ta       a  a       tg c  t      a  g       at g  a      t  t       tg at        ta        gc gc        gt        at at        ta        ta gt        at        at at        ta        tg ta        gt        at                         gtatgtttttatgtaacgtatttattgaaattttttgtttaaatgaacgcgttaattttaataaaaatatatttaaagtgatttgatgagattatttgagatatatttgttgattatttgtcgaattttaatgtgatagtagttacataatcgaatattacatagtgctttatttgttgagaatcttataataattagagagctattATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [C] COG0356 F0F1-type ATP synthase, subunit a ... can be seen here     ..................................................................................................................