                                                                        Gene putatively regulated by attenuation in B_floridanus

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:73 nt.    Distance to gene:34 nt.     Distance to run of Ts=0 nt.   Size=37 nt.     Delta G=-10.90 kcal/mol
Antiterminator:    Distance from promoter:47 nt. Size=41 nt.     Delta G= -4.60 kcal/mol
Anti-antiterminator:    Distance from promoter:13 nt.    Size=54 nt.     Delta G=-10.40 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTTTCA-taaatt. It has a score value of 66.93 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTTTCATtatttaaataataatataaatttgtatatataaaaatatataatatatatgttaattaatattagagtaattaaacttgtattatata
taatatatgtactgagttaagtgtgttaaactatattcagtatattattttatgattaaattatgttcatatttttatgtaatgtATG

    rfaE Gene: rfaE     GI: 33519543     BI number: Bfl063     GOG: COG2870     Description: ADP-heptose synthas   t t  a a  g t  a a  g at ta         a ta       t  a at        at at        ta         t ta        at       g  t ta        ta       t  a g  a       at       g  a t  c      t  |       ta a  t       tg        gc t  |       at        at at        ta       a  a tg        gc       t  t at       |  t       ta ta        tg        gt at        ta        at at        cg        gc ta        at        ta at        at        cg ta       a  a       at at        ta        ta ta        tg        gt at        at        ta                         ttattttatgattaaattatgttcatatttttatgtaatgtATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [M] COG2870 ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase ... can be seen here     ..................................................................................................................