                                                                        Gene putatively regulated by attenuation in B_floridanus

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:112 nt.    Distance to gene:50 nt.     Distance to run of Ts=0 nt.   Size=28 nt.     Delta G= -8.30 kcal/mol
Antiterminator:    Distance from promoter:78 nt. Size=38 nt.     Delta G= -4.90 kcal/mol
Anti-antiterminator:    Distance from promoter:51 nt.    Size=42 nt.     Delta G=-12.60 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TCGAAA-GAAAAT. It has a score value of 60.24 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TCGAAAATACAACATTCTATAATAGAAAATGCTAAAATAATACCCAGCCGTATTACGG
GAACTCGATCTAAATATCAGCGTCAGTTGGCTCGAGCTATTAAAATAGCTCGTTTTTT
GTCATTGTTACCGTATATTGATCAAAATCGATAAtagataggtttattattgatatttttatgttgattagtagt
attgttatgataataatgtaaatagagatataagtATG

    rpsR Gene: rplI     GI: 33519565     BI number: Bfl087     GOG: COG0359     Description: 50S ribosomal subunit protein L AA T  A TA AT TA CG        CC GC       A  G AT       T  T GC        TA CG        GT |  T       TA        ag |  T      T  T      t  g |  T       AT        at |  T       CG        gt |  T       TA        at T  T       GT        ta CG       T  C       At GT        TA        At GC        TA        Ta T  |       TA        At TA        TA        Gt GT       T  T       Cg AT        GC        Ta CG        CG        At                         atttttatgttgattagtagtattgttatgataataatgtaaatagagatataagtATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG0359 Ribosomal protein L9 ... can be seen here     ..................................................................................................................                                                                         Gene putatively regulated by attenuation in B_floridanus                                                                         Characteristics of the secondary structures Terminator:    Distance from promoter:60 nt.    Distance to gene:110 nt.     Distance to run of Ts=0 nt.   Size=20 nt.     Delta G= -9.50 kcal/mol Antiterminator:    Distance from promoter:31 nt. Size=33 nt.     Delta G= -5.80 kcal/mol                                                                         Nomenclature/Definitions The most likely promoter is: TCGAAA-GAAAAT. It has a score value of 60.24 and is shown in blue Bases shared by the antitermination and termination structures are shown in red The sequences of the antiterminator and terminator structures are underlined Coding regions are in CAPS, non-coding regions are in lower case TCGAAAATACAACATTCTATAATAGAAAATGCTAAAATAATACCCAGCCGTATTACGG GAACTCGATCTAAATATCAGCGTCAGTTGGCTCGAGCTATTAAAATAGCTCGTTTTTT GTCATTGTTACCGTATATTGATCAAAATCGATAAtagataggtttattattgatatttttatgttgattagtagt attgttatgataataatgtaaatagagatataagtATG     rpsR Gene: rplI     GI: 33519565     BI number: Bfl087     GOG: COG0359     Description: 50S ribosomal subunit protein L TC G  A CG GT AT CG TG A  C T  | A  | A  |       AA A  |      T  A T  |       TA C  |       AT T  |       TA AT        CG GC        GC CG        AT TA        GC CG        CG             TTTTTTGTCATTGTTACCGTATATTGATCAAAATCGATAAtagataggtttattattgatatttttatgttgattagtagtattgttatgataataatgtaaatagagatataagtATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG0359 Ribosomal protein L9 ... can be seen here     ..................................................................................................................