                                                                        Gene putatively regulated by attenuation in B_floridanus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:188 nt.     Distance to run of Ts=1 nt.   Size=21 nt.     Delta G= -6.30 kcal/mol
Antiterminator: Size=61 nt.     Delta G=-12.70 kcal/mol
Anti-antiterminator:   Size=46 nt.     Delta G= -4.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GATTGCCTAATAGAGACGCATTAAAATCGATAGGGGAGCATAATGTATGTATTCATGT
GTATAATGAAATATATGCAAATTTAACTGTTCATATACTGAATAGTGTTTTATTTCAA
GATAAAAGTAAAAAGAGTTAAtataattgtttaaataaaatataaataatttatttgttgtgaatgtaagaatatataatgttat
gaaaatgaatttgtttatttttgcaatgaataaagagcttgatgtaatttatacgtaataattgtaatacataaatatatgtttgaatatagtaataaaA
TG

    rplI Gene: cysQ     GI: 33519566     BI number: Bfl088     GOG: COG1218     Description: cysQ protei             T           G  A           T  T           G  A            TA            AT            CG           |  A            TA GG        TA A  G       AT T  G       TA A  A       GT G  G       TA GC        AT TA        TG AT        GC a  A       TA a  A      A  A aT       A  A tG       T  | aT       A  | a  A      C  |        T t  |       GT       A  A g  |       AT       T  C aT        GT        AT tG       G  A       CG aT       G  A       TA tA        GC        TA aT        AT        GT aT        TG        TA gC        AT        CG tA        GT        AT                         GTTTTATTTCAAGATAAAAGTAAAAAGAGTTAAtataattgtttaaataaaatataaataatttatttgttgtgaatgtaagaatatataatgttatgaaaatgaatttgtttatttttgcaatgaataaagagcttgatgtaatttatacgtaataattgtaatacataaatatatgtttgaatatagtaataaaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [P] COG1218 3'-Phosphoadenosine 5'-phosphosulfate (PAPS) 3'-phosphatase ... can be seen here     ..................................................................................................................