Gene putatively regulated by attenuation in B_floridanus

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:67 nt.    Distance to gene:20 nt.     Distance to run of Ts=0 nt.   Size=29 nt.     Delta G= -8.40 kcal/mol
Antiterminator:    Distance from promoter:34 nt. Size=47 nt.     Delta G= -4.73 kcal/mol
Anti-antiterminator:    Distance from promoter:23 nt.    Size=30 nt.     Delta G=-13.50 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: TTATTT-TATAAT. It has a score value of 70.95 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

TTATTTATTCAGAAAAAAATTGGTATAATTAATTATTAAgtattatataagatttttcatcatcatggatg
atgatgaaaaaaatataaactctatcactatcaagtatggattcttgatgagtgttatttgaaaaatttaaaattaaaATG

    rpsA


Gene: rpsA     GI: 33519839     BI number: Bfl380     GOG: COG0539     Description: 30S ribosomal protein S


            t
          a  a
          t  a
          a  a
          a  c
          a  t
          a  c
          a  t
          a  a
 gg        at        gg
t  a       gc       t  a
 at        ta       a  t
 cg       a  c      t  t
 ta        gt        gc
 at        ta        at
 cg        at        at
 ta        gc        cg
 at        ta        ta
 cg       a  a       at
 ta       g  g      |  g
 ta        gt        ta
 ta        ta        cg
 ta        at        at
 ta        cg        cg
                        ttatttgaaaaatttaaaattaaaATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[J] COG0539 Ribosomal protein S1 ... can be seen here

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