Gene putatively regulated by attenuation in B_floridanus

                                                                        Characteristics of the secondary structures
Terminator:    Distance from promoter:76 nt.    Distance to gene:138 nt.     Distance to run of Ts=0 nt.   Size=34 nt.     Delta G=-13.50 kcal/mol
Antiterminator:    Distance from promoter:30 nt. Size=55 nt.     Delta G= -4.10 kcal/mol

                                                                        Nomenclature/Definitions
The most likely promoter is: tttata-taatct. It has a score value of 62.25 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

tttatataatctgtaagatatttaatctattgactaaataatttcatacttcataaaattaattattattcaaaattttacttaaaataagtattatcaa
aaaataatattaaaagcattaaaatgcttttaatattattttatatttatccaaaaattaagtttcattacaaaattaaaattaatatcacattcatcac
atcctcttacataaacgctataattaaacaaaactataaccgaacctatatttagtattcattacctgtaaaaaactattATG

    dsbB


Gene: dsbB     GI: 33519892     BI number: Bfl438     GOG: COG1495     Description: disulfide bond formation protein


  a
a  a
 at
 ta
 ta
 cg
 at
 ta
t  t
t  t
 ta
 at
|  c       aa
a  a      t  a
a  a       ta
a  a       at
c  a       cg
 ta        gc
 ta        at
 at        at
 ta        at
 ta        at
 at        ta
t  |       ta
 ta        at
 at        ta
 at        at
 ta        at
 ta        ta
            ttttatatttatccaaaaattaagtttcattacaaaattaaaattaatatcacattcatcacatcctcttacataaacgctataattaaacaaaactataaccgaacctatatttagtattcattacctgtaaaaaactattATG
                                                                        Orthologous genes that have a predicted attenuator, grouped in COG families

[O] COG1495 Disulfide bond formation protein DsbB ... can be seen here

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