                                                                        Gene putatively regulated by attenuation in B_floridanus

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:160 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G= -9.30 kcal/mol
Antiterminator: Size=45 nt.     Delta G= -3.40 kcal/mol
Anti-antiterminator:   Size=61 nt.     Delta G= -6.64 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

gtgagtttaatattaatattaattctatattgagagatatattttgctgatgtaaataaaatcaatgttaaataatggaatagttgtatgtttttgttgt
cattactaaatattatgatttaatggtatttagttttttgttgatcaaagaatttttatatatctatctatatagttatattatttgagtgatgttattt
tattatgttaattaatatgtatgttgtgtgtaaattatgaatataatttaatttttataagataaatggcaatatataattaagtatcaggggtatgaat
ATG

    aspS Gene: aspS     GI: 33519906     BI number: Bfl452     GOG: COG0173     Description: aspartyl-tRNA synthetas ga t  t cg gt ta ta ta t  t a  a t  a       tg a  a      t  t t  a      t  t a  |      t  g g  |      t  t a  |       gc g  |       ta at        at gc       t  t ta       g  |       tt ta       t  |      a  t at        ta       g  a tg        gc        ta at        at        at t  t       ta        tg c  a      a  a       tg ta       a  a       at ta       g  |       ta a  |       gt        at at        ta        at ta        at        at ta        at        ta at        ta        cg tg        at        at                         tttttgttgatcaaagaatttttatatatctatctatatagttatattatttgagtgatgttattttattatgttaattaatatgtatgttgtgtgtaaattatgaatataatttaatttttataagataaatggcaatatataattaagtatcaggggtatgaatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [J] COG0173 Aspartyl-tRNA synthetase ... can be seen here     ..................................................................................................................