Gene putatively regulated by attenuation in B_bronchiseptica
Characteristics of the secondary structures
Terminator: Distance to gene:71 nt. Distance to run of Ts=0 nt. Size=37 nt. Delta G= -9.60 kcal/mol
Antiterminator: Size=74 nt. Delta G=-28.30 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G=-18.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CCGTGGAACAAAACAGGGACACAAGAGTACAAGCAGCAAACTTGCTCACGCGGGAAAT
CATggattcctccctggagccgcccggctcgcacagccttgcgcggcggccctatgcgccggcgcccgtcggccggcttccaatgatctgccaaaccg
atgcgcgtagcaagttccctgctggcgcattgcggcacaagtggccaccaatgtttacggcctaggctgttttatgggttgcgcgcccgtcgcgggccgg
cttatggtgtaactgcagcggcgcaagcgccgctacaggagaccATG
BB0407
Gene: BB0407 GI: 33599396 BI number: BB0407 GOG: ------- Description: putative exported protei
t
t c
g c
a c
at
cg
gc
at
tg
g |
cg
gc
cg
gc
ta
at
gt
cg
c c
a |
aa a |
c t a |
cg cg
ta cg
| t gc tg
| c ta a t
t t c c a t
cg t | c t
gc a | c a
gc g | a c
| a t | cg
c a a | cg
c a a | gc
gc c | gc
gc c | t t
cg ta g a
ta ta a g
gt cg a |
cg g | c |
c c gt a |
cg cg cg
gc cg gc
cg gc gt
gt gc cg
ttttatgggttgcgcgcccgtcgcgggccggcttatggtgtaactgcagcggcgcaagcgccgctacaggagaccATG
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