                                                                        Gene putatively regulated by attenuation in B_bronchiseptica

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:127 nt.     Distance to run of Ts=0 nt.   Size=31 nt.     Delta G=-19.20 kcal/mol
Antiterminator: Size=17 nt.     Delta G= -4.60 kcal/mol
Anti-antiterminator:   Size=51 nt.     Delta G=-18.90 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCTCGGCGTACAGGCCGTAGGGACAGATCTGCGGCGAATTGCGGCCGGCGGGCAGGGC
GCCGGGCAGGGCTTCGGTGGCGCAGGCGTTGCCGAAGCCGGTCTGATATTGCAAGGAC
ATggatgcctcctggcggtgcggcctggttcggcgcggtggccgtccgggctttttttcgtgggggcggcgcgcgggaagcggccgtggaaaaagcgcg
ttcgagccattctgcgcaaaattgcccgctatggctacgggaatgcaaaaatagtggctataactttcgtgaataatggtgctccATG

    BB0893 Gene: BB0893     GI: 33599882     BI number: BB0893     GOG: COG0583     Description: putative LysR-family transcriptional regulato   t a  g gc gc T  | A  | C  | At Gc Gc At A  g Cg                  gg Gc                 c  t Tg                 g  g Tg                  cg At                  gc Tg                  gc A  |                 cg Gc        gt       t  t Tg       g  t      t  | Cg       t  c       gc T  c       cg        gc Gc        cg        tg Gt        gc        cg Cg       |  g       cg Cg        gc        gc Gt        cg        gt                         ttttttcgtgggggcggcgcgcgggaagcggccgtggaaaaagcgcgttcgagccattctgcgcaaaattgcccgctatggctacgggaatgcaaaaatagtggctataactttcgtgaataatggtgctccATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [K] COG0583 Transcriptional regulator ... can be seen here     ..................................................................................................................