Gene putatively regulated by attenuation in B_bronchiseptica
Characteristics of the secondary structures
Terminator: Distance to gene:12 nt. Distance to run of Ts=0 nt. Size=20 nt. Delta G=-12.40 kcal/mol
Antiterminator: Size=63 nt. Delta G=-24.51 kcal/mol
Anti-antiterminator: Size=36 nt. Delta G= -8.80 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCGGCGAGCCCATCGACGAGCCGGTGGTGGGCCATGGGCCGTTCGTCATGAACACCCA
GGCCGAGATCGTGCAGGCCATCGACGACTTCAACCGCGGCGCGTTCGGCCGCATGGGC
TGAgcggccatccccacgagggggggcctgtccccacggggacaggcgcccctctctccgacatttcctgctttacgtggagcaaatacctgacgctg
gcgcggacatctgcgagttactctggcttgccttcgtagcaacctctgccggcgttcatccgccggttttttttatccggccagccATG
BB1280
Gene: BB1280 GI: 33600266 BI number: BB1280 GOG: NOG10340 Description: putative exported protei
tt
c g
gc
gc
t |
c |
t |
c |
a |
t |
t |
gt
at
gc
cg
gt
ta
ca cg
a t t c
gc a a
gt c a
cg a c
gc gc
cg gt
g a c c
g g gt ca
t t cg t t
c t gc t c
g a gc gc
c c tg cg
at cg gc
gc gc gc
t t cg cg
cg at cg
cg gt gt
tttttttatccggccagccATG
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