Gene putatively regulated by attenuation in B_bronchiseptica
Characteristics of the secondary structures
Terminator: Distance to gene:143 nt. Distance to run of Ts=3 nt. Size=22 nt. Delta G=-13.80 kcal/mol
Antiterminator: Size=44 nt. Delta G= -6.47 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G=-12.14 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCGGTGTCGGTGGCGACCACCAGTTCCTTGTCCTGGGCCGACGCCGTGGACACGGCGC
CCAGCAGGGCCGCCGACGCGCCGATCAGTACGGCCGCAACTTTCGCTTTGATCATggaa
ctctcctcttggggtctgctcaggccccagccatttgttgtaaggggctaccatctccgagtccgtgccgcatgggtaatccggcgcggacctgcggatc
atcttaacgcatacgtcccccgccgccatccccccgcgggtcattacaatcaaaccagaagcgacccacgacaggagcctgccATG
BB2977
Gene: BB2977 GI: 33601953 BI number: BB2977 GOG: NOG43341 Description: conserved hypothetical protei
ct
a c
at
gc
gc
A T t
C G A c
T T C |
A A T |
GC A |
CG G |
CG T |
| C T |
GC T |
CG C |
GC G |
C A C |
A A T |
G C T | ct
C T T | g c
C T C | ta
G T At cg
C C At tg
CG Cg gc
GC G g gc
GT Cg gc
GT Cg gc
AT Gt ta
CG Gc tg
ccatttgttgtaaggggctaccatctccgagtccgtgccgcatgggtaatccggcgcggacctgcggatcatcttaacgcatacgtcccccgccgccatccccccgcgggtcattacaatcaaaccagaagcgacccacgacaggagcctgccATG
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