                                                                        Gene putatively regulated by attenuation in B_parapertussis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:2 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G=-13.70 kcal/mol
Antiterminator: Size=34 nt.     Delta G= -7.30 kcal/mol
Anti-antiterminator:   Size=29 nt.     Delta G=-12.30 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GGCGCGGGCATTCCGGGCCAGTATCCCCGCCTGTCGGGACAGTTTTCGTCGTACATCG
AAGAACAGCTCAAGCTGTTCCGCAGCGGCGAGCGTGGCAATAGCGTGCCCATGCACGA
CATCGCGGACCGTATGTCCGACGCCGATATCAAGGCTGTCGCCGATTACGCCGCGGGC
TTGCGCTGAccgggcccgagacgggcgcggccaggtgccgagccagaatttaaccgggcgccggaacaagtttgccgagcccgttgtctatgag
gggggaagccgattgcgcggcccccttttttcATG

    BPP0066 --- BPP0067 Gene: BPP0066     GI: 33594787     BI number: BPP0066     GOG: COG1333     Description: putative membrane protein Gene: BPP0067     GI: 33594788     BI number: BPP0067     GOG: COG0755     Description: putative cytochrome c asssembly protei             c           t  t           g  a           t  t ag       t  g a  t      g  a       tg c  t       cg       t  c a  t       cg       a  g a  g       cg        gc gc       g  |       cg gc       a  |       cg cg       g  |       gc c  a       cg       a  | g  |       cg       a  | cg       g  g       gc gc        ta        gc gc        ta        gc gc        tg        gc cg        gc        gt                         tttttcATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [O] COG1333 ResB protein required for cytochrome c biosynthesis ... can be seen here [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component ... can be seen here     ..................................................................................................................