Gene putatively regulated by attenuation in B_parapertussis
Characteristics of the secondary structures
Terminator: Distance to gene:89 nt. Distance to run of Ts=2 nt. Size=33 nt. Delta G=-11.76 kcal/mol
Antiterminator: Size=12 nt. Delta G= -5.20 kcal/mol
Anti-antiterminator: Size=57 nt. Delta G=-13.06 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
agagtaccggttttttaggggcggggtggccagtatgactggcgggctctccgtgcacgctacctgCTAGACTGACCGGCGCGGCG
GATTCGCCGCGGAGTCGAGCGACGCGAACTCGAAGGCAATTGGATATTCATCGGTTTG
TCTCGGGTTGGCCGCATCGGGACTCTCCGCCTTCAGGCGCTTCGGCGCATAATCATCG
GCATTTCTTCGGTAGGCGGCTGGACGCCTACTAATCACgttacgggcaaggtgccgacgtccgtgcccggaa
atccagaaaacactgccgacagactgATG
BPP0992 --- BPP0991
Gene: BPP0992 GI: 33595669 BI number: BPP0992 GOG: ------- Description: hypothetical protein
Gene: BPP0991 GI: 33595668 BI number: BPP0991 GOG: ------- Description: hypothetical protei
G
G C
T C
TG
GC
| A
GT
GC
CG
TG
CG
TA
GC
T T
T C
T T
GC
GC
C |
T |
A | TC
C | T G
T | CG
T | GC
A | CG
T | GC
A | | A
G | G T
G | A A
T | C A
T | T T
A | TC T C
A | T A C A
CG CG C T
GC CG GC
GC GC CG
AT CG CG
CATTTCTTCGGTAGGCGGCTGGACGCCTACTAATCACgttacgggcaaggtgccgacgtccgtgcccggaaatccagaaaacactgccgacagactgATG
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