Gene putatively regulated by attenuation in B_parapertussis
Characteristics of the secondary structures
Terminator: Distance to gene:200 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-19.60 kcal/mol
Antiterminator: Size=43 nt. Delta G=-25.70 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTAAAGTGAAGAACACAGCAAGCATggtggcgcgccgggacggcgcgcacgcgcagtgtgcgcggagcgcatcggctcgtcg
cgcgagccggtgtttttcttacagcctgctgccgggcgcgtcagtcacgggcaagccggcggatcgccggcctcgtcgtccccggggtatcgctgcgcca
tgcggcgcaatgccgcgcaatgccgccaactggcggcggaaggcgcggcgggcaacatgacgagattgtcagaagattgtgcgcgagcgtgggaaaccgc
tgtttataatctcggaccATG
BPP1077
Gene: BPP1077 GI: 33595753 BI number: BPP1077 GOG: NOG42262 Description: putative lipoprotei
t
g g
a t
cg
gc
cg
gc
cg
a g
c a
g | g
cg c c
gc t g
cg gc
gc cg
g a ta
c | cg
a | gc
g | gc
gt cg
gc tg
cg at
cg cg
gc gt
ttttcttacagcctgctgccgggcgcgtcagtcacgggcaagccggcggatcgccggcctcgtcgtccccggggtatcgctgcgccatgcggcgcaatgccgcgcaatgccgccaactggcggcggaaggcgcggcgggcaacatgacgagattgtcagaagattgtgcgcgagcgtgggaaaccgctgtttataatctcggaccATG
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