Gene putatively regulated by attenuation in B_parapertussis
Characteristics of the secondary structures
Terminator: Distance to gene:47 nt. Distance to run of Ts=0 nt. Size=34 nt. Delta G=-22.90 kcal/mol
Antiterminator: Size=72 nt. Delta G=-19.63 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G=-19.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
tcggtggcgccgtgacggtgcgcgcacaggcggcggcgctggtcgtgtgggtagagccggcgtcgcggttgcgcgcgatgctggctgtcgcgctgcaagg
attttcaaaatgggttatgattacgttcatcagaCGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATA
ACCCGAAGGTCGTAGGTTCAAATCCTGCCCCCGCAACCAgatcaaaaaggcttggcgattcatcgccaggc
cttttttgttttcgcagtcgcagtcgcagctttgcgcgcttggcgcggcggggcttcTTG
BPP2612
Gene: BPP2612 GI: 33597193 BI number: BPP2612 GOG: ------- Description: hypothetical protei
A
C A
T A
T T
GC
GC
AT
TG
GC
C C
C T C
G T GC
A C GC
CG | G
GT | C
GC | A
TG | A
CG | C
T | A C
G | A A
A | G g
CG C a
GC C t tc
AT C c t a
GC A a at
| A A a gc
G T T a cg
T A A a gc
G A C a gc
GC Tg ta
GC Cg tg
GC Gc cg
CG Gt gc
| A Gt gc
| A Cg at
G G Tg at
CG Gc at
aT Cg at
gC Ta at
tgttttcgcagtcgcagtcgcagctttgcgcgcttggcgcggcggggcttcTTG
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