Gene putatively regulated by attenuation in B_parapertussis
Characteristics of the secondary structures
Terminator: Distance to gene:84 nt. Distance to run of Ts=0 nt. Size=25 nt. Delta G=-18.30 kcal/mol
Antiterminator: Size=40 nt. Delta G=-15.50 kcal/mol
Anti-antiterminator: Size=55 nt. Delta G=-21.43 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGCCTGAacagagcgtaacggcggagatctcatATGCGCAGCAAGATAGTGCTGACGGCTTTCGTGGTG
TTTGGATTCGTCCTGCAGGGCTGCAACACCGTTGCAGGAATGGGCAAGGATATGTCCG
ATGCGGGCAGTGCCATTACCCACGCTGCCGAGAAGTAGccggcccgcgccggcatgatgcaagcccccggtt
gctccgggggttttttttggttcatcgcgcaatagcgtggaggggtttggcaagttttcgtattcttgacggcaggtatttgccatcaggagtgcaggga
gATG
BPP2649
Gene: BPP2649 GI: 33597229 BI number: BPP2649 GOG: ------- Description: transposas
AG
G A
C A
CG
GT
TA
CG
Gc
C c
A g
C |
C |
C | g
A | t a
T | a t
T | cg
A | gc
C | g a
C | c a
G | c |
T | g |
G | cg g
A | gc t c
Cg c c t t
Gc c c gc
Gc c | gc
Gc gc cg
Cg gc cg
Gc cg cg
Tg cg cg
A c Gt cg
Gc At gt
Cg Tg at
Cg Gc at
tttttggttcatcgcgcaatagcgtggaggggtttggcaagttttcgtattcttgacggcaggtatttgccatcaggagtgcagggagATG
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