Gene putatively regulated by attenuation in B_pertussis
Characteristics of the secondary structures
Terminator: Distance to gene:152 nt. Distance to run of Ts=0 nt. Size=18 nt. Delta G=-13.60 kcal/mol
Antiterminator: Size=31 nt. Delta G= -9.20 kcal/mol
Anti-antiterminator: Size=58 nt. Delta G=-10.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AATGGCAAAAACCTGCCATTCGATTCGAGAACTTAGGGATCGGGTGGCTGAGCACTAC
GGACACAACACCGTACAACTGACGTTGACCCTTCCGAGAAGTCAGAGGTGAagaagccgacc
ttccagccgcctccgggcggcttttttgttggccaatgccagcggcctggtggcttacaatcggcaaactattggctgctaggtgtgaagattcaatagg
ttgtatgcatggttcatccgaaccggatttgagaaactggaaatcgccacccccccagttcactcaaggagcccggccggATG
BP0295 --- BP0294
Gene: BP0295 GI: 33591529 BI number: BP0295 GOG: ------- Description: transposase
Gene: BP0294 GI: 33591528 BI number: BP0294 GOG: NOG41244 Description: putative 5'(3')-deoxyribonucleotidas
C
C T
C T
A C
GC
TG
TA
| G
| A
G A
CG
AT
GC
TA
CG
A A
A | g
C | c a
A | c c
T | gc
G | at
CG at
CG gc
AT | c
CG | a cc
A A a g t g
A a A c cg
C g Gc cg
A a Tg gc
C a Gc cg
A g Gc cg
Gc At gc
Gc Gc at
tttttgttggccaatgccagcggcctggtggcttacaatcggcaaactattggctgctaggtgtgaagattcaataggttgtatgcatggttcatccgaaccggatttgagaaactggaaatcgccacccccccagttcactcaaggagcccggccggATG
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