Gene putatively regulated by attenuation in B_pertussis
Characteristics of the secondary structures
Terminator: Distance to gene:200 nt. Distance to run of Ts=0 nt. Size=27 nt. Delta G=-11.00 kcal/mol
Antiterminator: Size=42 nt. Delta G=-14.60 kcal/mol
Anti-antiterminator: Size=29 nt. Delta G=-10.20 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
cgcctcgggatcggtcttggcatagaccaccagcgtatcggcgtcggggccgttggtgatccacatcttggtgccgttgagcacatagcggtcgcctttc
ttgtcggcgcgcaggcgcatgctgaccacatcggaccccgcgcccggctcgctcatggccagcgcgcccacgtgttcgccgctgaccagcttgggcaggt
agctgtgaagattcaataggttgtatgcatggttcatccgaaccggatttgagaaactggaaatcgccacccccccagttcactcaaggagcccggccgg
ATG
BP0443
Gene: BP0443 GI: 33591660 BI number: BP0443 GOG: ------- Description: transposas
c
t c
a a
gc
ta
gt
gc
t t
cg t |
g t gt ca
gc cg g c
cg cg a a
tg gt gt
| g g g ta
a g gc tg
t c gc gc
gc cg cg
cg | t cg
gt | t | t
at t g gc
cg g a tg
cg cg gc
at gc gc
tttcttgtcggcgcgcaggcgcatgctgaccacatcggaccccgcgcccggctcgctcatggccagcgcgcccacgtgttcgccgctgaccagcttgggcaggtagctgtgaagattcaataggttgtatgcatggttcatccgaaccggatttgagaaactggaaatcgccacccccccagttcactcaaggagcccggccggATG
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