                                                                        Gene putatively regulated by attenuation in B_pertussis

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:191 nt.     Distance to run of Ts=0 nt.   Size=30 nt.     Delta G=-22.40 kcal/mol

                                                                        Nomenclature/Definitions

CAGTTGGTTAGAATACCGGCCTGTCACGCCGGGGGTCGCGGGTTCGAGCCCCGTCCGC
TCCGCCAaaaaattccgaaaagccagttgcgtaagcaactggctttttttcttcccgggtgccttgtatctttcctccggtggtgattagctatc
accaccgcgcgccgatgaccgcgagttggtgcccaaagcgaggactttgtgggacagatagcggctcggcagcgcactgctgggccggcgagacactgga
cggtatcgtagggcgaggaccctgtatgtacaaggcaagtgggcgcaGTG

    BP1035 Gene: BP1035     GI: 33592179     BI number: BP1035     GOG: COG3547     Description: transposase for IS166           ta          g  a           cg           gc           ta           ta           gc           at           cg           cg           gc           at           at           at           at             tttcttcccgggtgccttgtatctttcctccggtggtgattagctatcaccaccgcgcgccgatgaccgcgagttggtgcccaaagcgaggactttgtgggacagatagcggctcggcagcgcactgctgggccggcgagacactggacggtatcgtagggcgaggaccctgtatgtacaaggcaagtgggcgcaGTG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [L] COG3547 Transposase and inactivated derivatives ... can be seen here     ..................................................................................................................