Gene putatively regulated by attenuation in B_pertussis
Characteristics of the secondary structures
Terminator: Distance to gene:142 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-17.70 kcal/mol
Antiterminator: Size=45 nt. Delta G=-19.00 kcal/mol
Anti-antiterminator: Size=45 nt. Delta G=-15.43 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CTTTCGTGGTGTTTGGATTCGTCCTGCAGGGCTGCAACACCGTTGCAGGAATGGGCAA
GGACATGTCCGATGCGGGCAGTGCCATTACCCACGCTGCCGAGAAGTAGccggcccgcgccggc
atgatgcaagccctcggtcatccgggggcttttcttttgccgcggcgtccacggacggctggcgtcggcgcgcgtcgagtcaagtcccgatgacacattg
atccggctcggcatgtacgaattgtaggcaggccccgccacggccacactgaggcctcgtcgaacagcaggagggcctATG
BP2530 --- BP2529
Gene: BP2530 GI: 33593513 BI number: BP2530 GOG: ------- Description: integral membrane protein
Gene: BP2529 GI: 33593512 BI number: BP2529 GOG: ------- Description: putative exported protei
AG
G A
C A
CG cg
GT c c
TA cg
CG gc
Gc gc
C c cg
A g cg
C | Gc
C | | a
C | | t
A | | g
T | | a
T | At
A | Tg
C | Gc ca
C | | a t t
G | | a gc
T | | g gc
G | A c cg
A | A c tg
Cg Gc cg
Gc At cg
Gc Gc cg
Gc Cg gc
Cg Cg at
Gc Gt at
ttcttttgccgcggcgtccacggacggctggcgtcggcgcgcgtcgagtcaagtcccgatgacacattgatccggctcggcatgtacgaattgtaggcaggccccgccacggccacactgaggcctcgtcgaacagcaggagggcctATG
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