Gene putatively regulated by attenuation in B_pertussis
Characteristics of the secondary structures
Terminator: Distance to gene:61 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-17.70 kcal/mol
Antiterminator: Size=72 nt. Delta G=-19.63 kcal/mol
Anti-antiterminator: Size=51 nt. Delta G=-19.60 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ccgtgacggtgcgcgcgcaggcggcggcgctggtcgtgtgggtagagccggcgtcgcggttgcgcacgatgctggctgtcgcgctgcaaggattttcaaa
atgggttatgattacgttcatcagaCGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCG
AAGGTCGTAGGTTCAAATCCTGCCCCCGCAACCAgatcaaaaaggcttggcgattcatcgccaggcctttttcgt
tttcgcagtcgcagctttgcgcgcttggcgcggcagggcttcttgccagccctgctcATG
BP2567
Gene: BP2567 GI: 33593550 BI number: BP2567 GOG: ------- Description: hypothetical protei
A
C A
T A
T T
GC
GC
AT
TG
GC
C C
C T C
G T GC
A C GC
CG | G
GT | C
GC | A
TG | A
CG | C
T | A C
G | A A
A | G g
CG C a
GC C t
AT C c
GC A a
| A A a
G T T a
T A A a tc
G A C a t a
GC Tg at
GC Cg gc
GC Gc cg
CG Gt gc
| A Gt gc
| A Cg ta
G G Tg tg
CG Gc cg
aT Cg gc
gC Ta gc
tttttcgttttcgcagtcgcagctttgcgcgcttggcgcggcagggcttcttgccagccctgctcATG
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