Gene putatively regulated by attenuation in B_pertussis
Characteristics of the secondary structures
Terminator: Distance to gene:156 nt. Distance to run of Ts=0 nt. Size=31 nt. Delta G=-24.30 kcal/mol
Antiterminator: Size=40 nt. Delta G=-10.60 kcal/mol
Anti-antiterminator: Size=21 nt. Delta G= -7.40 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
CGACCTGGCCGAGAAATCGATCGCGGCCCGCAAGAAATAAgcagcagcccaaggggaacggcggcgcaag
ccgccacgcaaggcaggggcgcacaaccctccaacccaacggacgccggccaaaagctggcgtccgtttctttttcctcccggagcctgtccccacgggg
acaggctccccgtcacacgccacgaacgctagctgtgaagattcaataggttgtatgcatggttcatccgaaccggatttgagaaactggaaatcgccac
ccccccagttcactcaaggagcccggccggATG
BP2672
Gene: BP2672 GI: 33593641 BI number: BP2672 GOG: ------- Description: transposas
cc
c a
a a
a c
cg
cg
ta
c |
c |
c | a
a | a a
a | c a
c | cg
a | gc
ca c | gt
g c gc cg
c a cg cg
g a gc gc
gc gc cg
gc g g at
gc g | gc
at a | gc
c | cg cg
gc gc at
gc gc at
tctttttcctcccggagcctgtccccacggggacaggctccccgtcacacgccacgaacgctagctgtgaagattcaataggttgtatgcatggttcatccgaaccggatttgagaaactggaaatcgccacccccccagttcactcaaggagcccggccggATG
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