Gene putatively regulated by attenuation in B_burgdorferi
Characteristics of the secondary structures
Terminator: Distance to gene:156 nt. Distance to run of Ts=2 nt. Size=33 nt. Delta G=-11.60 kcal/mol
Antiterminator: Size=40 nt. Delta G= -5.20 kcal/mol
Anti-antiterminator: Size=56 nt. Delta G= -4.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GCAGCACCTAAGCAAGTGGCAAGTAAGAGCTATACAAAACAAGAGCAAGATGAAGCTT
GGGTCAAATTTAGTGATAGGATACAAAAAAAATAGcgtttgtaagtaagcggatttatttgTTAAAATA
AATCCCTTGGCTTTCTTGCTGTATTTTTTGAAGTTTGACATTCTGCATAATGCTTTAT
TTTCCCATTTTCAAATTTTGATTTCATTATAATTTTTCCTCCCCATCGACTTATTAGT
TCTTTTGAACCCACTCTTTGAGCGTTTTTAGAAATTTTAGCCATtttaaagctccttTTG
BB0161
Gene: BB0161 GI: 15594506 BI number: BB0161 GOG: ------- Description: B. burgdorferi predicted coding region BB016
AG
T T
TG
TA
AT
A A
A G
CG
TA
G T
G A
GC
TA
| A aa
| A t g
| A gt
| A ta
| A ta TT
| A tg g A
| A gc tA
| T cg tA
TA G g tA
CG A | aT
Gc Ta tA
A g At tA
A | At tA
G | At aT
T | A a gC
A | A | gC
Gt At c |
At At gC
At At aT
Cg Cg aT
Gt AT tG
GCTTTCTTGCTGTATTTTTTGAAGTTTGACATTCTGCATAATGCTTTATTTTCCCATTTTCAAATTTTGATTTCATTATAATTTTTCCTCCCCATCGACTTATTAGTTCTTTTGAACCCACTCTTTGAGCGTTTTTAGAAATTTTAGCCATtttaaagctccttTTG
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