Gene putatively regulated by attenuation in B_burgdorferi
Characteristics of the secondary structures
Terminator: Distance from promoter:157 nt. Distance to gene:23 nt. Distance to run of Ts=0 nt. Size=31 nt. Delta G= -9.90 kcal/mol
Antiterminator: Distance from promoter:123 nt. Size=47 nt. Delta G= -8.50 kcal/mol
Anti-antiterminator: Distance from promoter:115 nt. Size=32 nt. Delta G=-10.70 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgaca-aaaaat. It has a score value of 80.99 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgacaaacatatatacttatgaaaaaattaaggtactagaataaaaatgctgctgtagctcagttggtagagcataggactgaaaatccttgtgtcagg
agttcgattctcctcggcagcatgcatttatttaaattacaattGTCGCTGTAGCTCAGTTGGTAGAGCATAGGAC
TGAAAATCCTTGTGTCAGGAGTTCGATTCTCCTCGGCGACAtttatttaaagattaaaaggatctcaaaG
TG
BB0204
Gene: BB0205 GI: 15594550 BI number: BB0205 GOG: ------- Description: B. burgdorferi predicted coding region BB020
A
G A
T A
C A
AT
GC
GC
AT
T |
AT
TG CG G
T G GT C A
G T A G T T
A A G | T T
CG A | GC
TA T | AT
CG GT GC
GC GC GC
A | TA AT
TA T G | C
GT G | CG
TA A | TG
CG CG GC
G | TA | G
CG CG TA
TA GT GC
GC AT TA
tttatttaaagattaaaaggatctcaaaGTG
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