                                                                        Gene putatively regulated by attenuation in B_burgdorferi

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:161 nt.     Distance to run of Ts=0 nt.   Size=26 nt.     Delta G= -6.60 kcal/mol
Antiterminator: Size=36 nt.     Delta G= -3.80 kcal/mol
Anti-antiterminator:   Size=46 nt.     Delta G= -3.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CTTGTTGTGTAGAATTTTAAATTTTTTAAGCTACCCGATTTTATCTTTTCGCTTAGAT
ATTTTATTGCATAATAAATAGTTGTACCTGTTCCGATTCCAAGGTTCATATTGCTTTT
GATATAGTGATCAATTGCATGTTTTGCTACCAAAATTTTTTGATTTTCCATaaattcttttc
cttgcttgataaacttaaagcttaatgtattttaaagtatatcattatttaattactaaggtttaaatcttgactagattttatgctaatttataattat
tagtattggtaaataaaataatATG

    BB0658 Gene: BB0658     GI: 15595003     BI number: BB0658     GOG: COG0588     Description: phosphoglycerate mutase (gpmA TA A  A C  T G  A TA TA        TC AT       T  C TA       A  A TG       G  A |  T       CG T  T       CG TG       T  T       AG AT       T  T      T  T TA        GC       A  G A  C       TA        TA GC       C  |       AT AT       C  |       GC TG        AT        TA |  T       TA        TA T  T       GT       T  T C  C      T  T      T  T GC        TG        CG CG        GC        GC TA        AT        TA                         TGTTTTGCTACCAAAATTTTTTGATTTTCCATaaattcttttccttgcttgataaacttaaagcttaatgtattttaaagtatatcattatttaattactaaggtttaaatcttgactagattttatgctaatttataattattagtattggtaaataaaataatATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [G] COG0588 Phosphoglycerate mutase 1 ... can be seen here     ..................................................................................................................