Gene putatively regulated by attenuation in B_burgdorferi_pl-cp26
Characteristics of the secondary structures
Terminator: Distance to gene:213 nt. Distance to run of Ts=0 nt. Size=24 nt. Delta G=-10.90 kcal/mol
Antiterminator: Size=47 nt. Delta G= -4.40 kcal/mol
Anti-antiterminator: Size=34 nt. Delta G= -3.10 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
AAAAAGAATAGgaaatttttttagaattgctattgcaaaacttgtgatacacaatattagagagctatttataaatagctctttttttggga
gataaaagaatttatttaaaattcgaagtttattattttatgatttaaattaataaaaagatttatcggtgtgaatagaatatttctttggtttattatg
catcctagtacatattatataatttaatttaatatataagcatatttttttaaaatcagaaattttttacttagctaaagattttaaacttggtataatt
gaattaatATG
BBB03 --- BBB02
Gene: BBB03 GI: 11497028 BI number: BBB03 GOG: ------- Description: B. burgdorferi predicted coding region BBB03
Gene: BBB02 GI: 11497029 BI number: BBB02 GOG: ------- Description: B. burgdorferi predicted coding region BBB0
t
a a
gc
ta
gc
ta
ta
at c t
t t a a
cg a t
gc a t
ta a a
ta c |
a a g | at
a a tg t a
gc ta ta
Gt a g ta
T t ta at
A g cg ta
t | gc cg
a | t t gc
at ta at
tg at gc
ta at at
at gt gt
tttttgggagataaaagaatttatttaaaattcgaagtttattattttatgatttaaattaataaaaagatttatcggtgtgaatagaatatttctttggtttattatgcatcctagtacatattatataatttaatttaatatataagcatatttttttaaaatcagaaattttttacttagctaaagattttaaacttggtataattgaattaatATG
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