Gene putatively regulated by attenuation in B_burgdorferi_pl-lp17
Characteristics of the secondary structures
Terminator: Distance from promoter:42 nt. Distance to gene:19 nt. Distance to run of Ts=1 nt. Size=21 nt. Delta G= -6.90 kcal/mol
Antiterminator: Distance from promoter:35 nt. Size=14 nt. Delta G= -4.60 kcal/mol
Anti-antiterminator: Size=54 nt. Delta G= -3.50 kcal/mol
Nomenclature/Definitions
The most likely promoter is: TCGATT-TAAACT. It has a score value of 65.6 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TCGATTTATTTCATGGCAGCTTTCTAAACTATTTAAAAGAACAGTATTTACCAAtacatg
atctagccttacttaaggcagctcctgtcttagcttttatttctttataaataagacttaagatTTG
BBD16
Gene: BBD16 GI: 11496603 BI number: BBD16 GOG: ------- Description: B. burgdorferi predicted coding region BBD1
AC
T C
TA
TA
At
Ta
Gc
| a
At
Cg
A a
At
Gc
At
A a
A |
A |
T |
T |
T |
A |
T |
C |
A |
A |
A |
T | t
C | c c
T | gc
T | at
T | ct cg
C | a t gt
G | ta gc
A | ta at
Cg cg at
Gc cg ta
Gc gc tg
cttttatttctttataaataagacttaagatTTG
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