Gene putatively regulated by attenuation in B_burgdorferi_pl-lp25
Characteristics of the secondary structures
Terminator: Distance from promoter:81 nt. Distance to gene:28 nt. Distance to run of Ts=0 nt. Size=39 nt. Delta G=-13.10 kcal/mol
Antiterminator: Distance from promoter:28 nt. Size=56 nt. Delta G= -4.82 kcal/mol
Anti-antiterminator: Distance from promoter:9 nt. Size=41 nt. Delta G= -3.50 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttgttt-tatgtt. It has a score value of 78.98 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttgtttagaaaagaatattgtgatatgtttttccatattataccccagctccttttaagtttgtaaaaatctaggtatatgttattaatataataatatt
aaaaccaaaaactattaattttaatttatgaaaaattaaaattaatagttttattatattttgaattaaatattttacataATG
BBE10
Gene: BBE10 GI: 11496628 BI number: BBE10 GOG: ------- Description: B. burgdorferi predicted coding region BBE1
t
a a
at
ta
ta
at
ta
ta
gt
ta
at
| t
tt | a
g t t a
a g a a g
at ta t a
ta gc a a
ta gc ta
ta a a ta
ta t a ta
c a c | at
c t t | at
t | a | ta
c | a | ta
gc a | ta
at a | ta
c a a | at
c | t | at
cg g | ta
cg ta ta
at ta at
ta ta ta
at gc cg
ta at at
tttattatattttgaattaaatattttacataATG
..................................................................................................................