Gene putatively regulated by attenuation in B_burgdorferi_pl-lp54
Characteristics of the secondary structures
Terminator: Distance from promoter:93 nt. Distance to gene:114 nt. Distance to run of Ts=0 nt. Size=28 nt. Delta G=-11.90 kcal/mol
Antiterminator: Distance from promoter:28 nt. Size=71 nt. Delta G= -7.50 kcal/mol
Anti-antiterminator: Distance from promoter:16 nt. Size=38 nt. Delta G= -7.30 kcal/mol
Nomenclature/Definitions
The most likely promoter is: ttaaaa-taaaat. It has a score value of 62.92 and is shown in blue
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ttaaaaataagtaaaattcatattttaaaatgtgagctatactttaagaatagctacatacttcatcaaggccagtagactgtttaaatcaatatgaaat
aacactacttttaactacctccaaagaagttcttttgcattagagaacttcttttttcaataattaatttctattatttttaataaatttaatcaaatta
gctttaaaacaacttattaataattaatattaattatataatgaaaaaaccaaaggataaggagaaataaATG
BBA60 --- BBA59
Gene: BBA60 GI: 11496906 BI number: BBA60 GOG: ------- Description: surface lipoprotein P27
Gene: BBA59 GI: 11496905 BI number: BBA59 GOG: ------- Description: lipoprotei
t
a a
a t
cg
ta
a a
a a
a t
t |
ta
ta
gc
ta
c |
a |
gc
at
ta
gc
at
| t
at | t
c c | t
ta | a
ta | a
cg | c
| g c t
a c c a ca
t c gc g t
a a gc t t
cg at ta
at | c tg
ta a c ta
cg c a cg
| a t a ta
gc a a ta
at cg gc
tg ta at
at ta at
at cg gc
gt at at
tttttcaataattaatttctattatttttaataaatttaatcaaattagctttaaaacaacttattaataattaatattaattatataatgaaaaaaccaaaggataaggagaaataaATG
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