Gene putatively regulated by attenuation in B_burgdorferi_pl-lp54
Characteristics of the secondary structures
Terminator: Distance to gene:201 nt. Distance to run of Ts=0 nt. Size=16 nt. Delta G= -8.20 kcal/mol
Antiterminator: Size=67 nt. Delta G=-12.77 kcal/mol
Anti-antiterminator: Size=46 nt. Delta G= -5.50 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
TTGCCGTTCTATGCCTCATCCATTGCCTTGCAACAAATATTGGAGCTTTAACATGAAA
TGTAAAAACCACCTGCTCCAATGGGCTTGTGTGCCCATTTCTTATTAAATAGTCAATA
AGTTCCGCATCTTTTCTTTTAACGCTCTCTTCTCGATAAGAAATCCTTGCAGCCTTAA
CTATTCTCCTATCATCTCCCATGAAATCAATAAGTTTTAAAAAACCATTATCCAAAAT
TTTATATTCTTTATTCAAaaattaattctccttccttaaggcaaattttattagttaagaatataaatATG
BBA75
Gene: BBA75 GI: 11496958 BI number: BBA75 GOG: ------- Description: B. burgdorferi predicted coding region BBA7
TG
A T
A A
A A
G A
T A
A A
C C
A C
A A
T C
T C
T T
CG
GC
GC AT
T C GC
T T GC
AT TA
CG TA
GC AT
TA T |
A A A |
t C A |
a A A |
a A C |
a | A |
tA A |
aT C |
tA G |
aT T |
aT TG GT
g G CG T G
a G CG T T
a | GC CG
tA T T GC
tG T | GC
gC AT GC
aT CG TA
TTTCTTATTAAATAGTCAATAAGTTCCGCATCTTTTCTTTTAACGCTCTCTTCTCGATAAGAAATCCTTGCAGCCTTAACTATTCTCCTATCATCTCCCATGAAATCAATAAGTTTTAAAAAACCATTATCCAAAATTTTATATTCTTTATTCAAaaattaattctccttccttaaggcaaattttattagttaagaatataaatATG
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