                                                                        Gene putatively regulated by attenuation in B_japonicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:72 nt.     Distance to run of Ts=0 nt.   Size=35 nt.     Delta G=-14.00 kcal/mol
Antiterminator: Size=20 nt.     Delta G= -7.10 kcal/mol
Anti-antiterminator:   Size=56 nt.     Delta G=-19.10 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GCGCGCGTCGCCTTGTTGACGCCGGCGTCGGTGGCCTGCGCCGACAGCACCACGGCGA
CCAGCAGCGTGAACGGATTGACGTGCTCGAGCTCGCCCTTCGGCTCCGGGTTGGCCTT
GCGGAAACGGCTGAAGACCTCGCGGATCTCGGCGGGCGTCCAAGGTTTCATCGCTTTG
AGCGATTTCTTCGCGGGGGCCTTCGGCTTCGCCACAGCCGCCTTTGCTTTTTTCTTAG
GCACAGCTGCTTTGCGCGGGACCGGCTTGCGGGTGATTTTCGCCATGATCGGGATATA
CTGAGGGACGATG

    bll0688 --- bll0687 Gene: bll0688     GI: 27375799     BI number: bll0688     GOG: COG5488     Description: - Gene: bll0687     GI: 27375798     BI number: bll0687     GOG: COG0350,COG2207     Description: transcriptional regulatory protei CA T  T T  C TG GC GT AT AT CG C  A T  G GC                   C CG                 G  C |  A                C  A |  T                T  C |  T                 TA |  T                 CG |  C                 GC GT                  GC GT                 C  | GC         T       T  | CG       T  C      T  | GC        CG       C  | G  G       CG        CG CG       G  |       GC TG        GC        GC CG        GT        GT TG        GT        GT A  |       GC        GT GC        CG        CG GC        GC        GC                         TTTTTTCTTAGGCACAGCTGCTTTGCGCGGGACCGGCTTGCGGGTGATTTTCGCCATGATCGGGATATACTGAGGGACGATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [S] COG5488 Integral membrane protein ... can be seen here [L] COG0350 Methylated DNA-protein cysteine methyltransferase ... can be seen here [K] COG2207 AraC-type DNA-binding domain-containing proteins ... can be seen here     ..................................................................................................................