Gene putatively regulated by attenuation in B_japonicum
Characteristics of the secondary structures
Terminator: Distance to gene:146 nt. Distance to run of Ts=1 nt. Size=26 nt. Delta G=-11.10 kcal/mol
Antiterminator: Size=40 nt. Delta G=-11.30 kcal/mol
Anti-antiterminator: Size=57 nt. Delta G=-11.00 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
ggccgcaggggaaagctttccccataaaggcacgtagtttcaaggaagcgtcattctcctttggttagtcgcggtgtattgtcagaagcaaacaactggg
ggctaaatgcgtggaaggtgaagcagagccggcagattcgccggaggcatttcttacgacattgggagaaagcctgaagcaaagagaaggtgtcgatgcc
ggcctagcggagatcctgaagacgtacatcctgaaggcggcgcccgctcagaaccccgtcgctcaggccaaggatgccatcctgaaactcgcaggcgaac
GTG
bll1930 --- bll1929
Gene: bll1930 GI: 27377041 BI number: bll1930 GOG: ------- Description: -
Gene: bll1929 GI: 27377040 BI number: bll1929 GOG: ------- Description:
g
a a
c a
tg
gc
ta
ta
a a
t c
g a ag
ta a g
gc g t
gt g g
cg t a
g g g a
cg cg
tg gc at
| g ta g t
gc a g a c
at a | cg
ta a | gc
ta ta gc
| a cg cg
g t gc cg
g g gc g a
t c g g a g
t g g g g |
t t gc a |
cg ta cg
cg cg gc
atttcttacgacattgggagaaagcctgaagcaaagagaaggtgtcgatgccggcctagcggagatcctgaagacgtacatcctgaaggcggcgcccgctcagaaccccgtcgctcaggccaaggatgccatcctgaaactcgcaggcgaacGTG
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