Gene putatively regulated by attenuation in B_japonicum
Characteristics of the secondary structures
Terminator: Distance to gene:87 nt. Distance to run of Ts=0 nt. Size=22 nt. Delta G=-13.70 kcal/mol
Antiterminator: Size=75 nt. Delta G=-16.42 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
The sequences of the antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GTCGAGAGGGCGCAAAGGCTTCGATCGAAAACTTTGCCGTCTTTGTCGAAAAAACATC
TGCGGCCGACCTTAAGGACCTCCTGGTCGCAATCAAGGAACAAGGCCTACCTGAAACG
GACGAGCTGGCGCGCGAGGCACGCCAACTTCAATCTGACCGCTTCGATCGATATCTAA
ttccctaccatcagcgcctggcatttagccggcgctttcttgtacgagagggctttgccgagctgatcgatgacctgcttgctgcggatgccgtaacggt
gggctagcctcagagtttgtgaacgaGTG
bll2154
Gene: bll2154 GI: 27377265 BI number: bll2154 GOG: ------- Description:
TC
T A
C A
A T
A C
C T
C G
G A
C C
A C
CG
GC
GT
AT
GC
CG
| A
| T
| C
| G
| A
| T
| A
| T
| C
| T
| A
| A
| t
| t
| c
| c
| c
| t
| a
| c
| c
| a
| t t
| c t t
G a a a
Cg cg
Gc gc
Cg gc
Gc t |
Gc cg
| t cg
Tg gc
Cg cg
Gc gc
tttcttgtacgagagggctttgccgagctgatcgatgacctgcttgctgcggatgccgtaacggtgggctagcctcagagtttgtgaacgaGTG
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