                                                                        Gene putatively regulated by attenuation in B_japonicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:186 nt.     Distance to run of Ts=1 nt.   Size=32 nt.     Delta G=-11.90 kcal/mol
Antiterminator: Size=38 nt.     Delta G=-11.40 kcal/mol
Anti-antiterminator:   Size=44 nt.     Delta G=-11.40 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

CGTGCTCATCGGGCTTTTCACCTCCGCCCAGCCGCTGCTGTTCGGCATGTCCAGGCAA
CTCGTCGACGCGCAGGTCGCGGGAAAGGCACTCGCTGCCGTCAATCTCGCCTTCTTTC
TCGGCACCGCGCTGATGCAGTCCGTCACCGGCGCGGTGGCGGCGCTCGCGGGGCTGCC
GGCGGTGCTGCTGTTCATGGCGGCAGCTCTCTTCATCGGCGTGCTGATCTTTTTGACT
TATACGTCGCCGCGTTCGTAGgatgggtagagcgcttcgcgaaacccatcatcttcgcacacgggtcgATG

    bll2699 Gene: bll2699     GI: 27377810     BI number: bll2699     GOG: COG2195     Description: GC C  T CG        GC GC       C  A AT       G  G CG        CG         C C  T       AT       T  G C  T       GC       C  C GC        CG        AT CG       T  |       CG CG        GC        GC T  C       CG        GC C  A       TG       |  G C  |       CG       |  T AT       |  A      |  C CG       |  A      A  A |  T      A  A      A  A T  C      A  G       AT T  C       CG        GC TA        GC        GT TG       |  A       GC CG        GC        CG GC        AT        GC                         CTTCTTTCTCGGCACCGCGCTGATGCAGTCCGTCACCGGCGCGGTGGCGGCGCTCGCGGGGCTGCCGGCGGTGCTGCTGTTCATGGCGGCAGCTCTCTTCATCGGCGTGCTGATCTTTTTGACTTATACGTCGCCGCGTTCGTAGgatgggtagagcgcttcgcgaaacccatcatcttcgcacacgggtcgATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [E] COG2195 Di- and tripeptidases ... can be seen here     ..................................................................................................................