Gene putatively regulated by attenuation in B_japonicum
Characteristics of the secondary structures
Terminator: Distance to gene:190 nt. Distance to run of Ts=1 nt. Size=25 nt. Delta G=-13.10 kcal/mol
Antiterminator: Size=34 nt. Delta G=-11.10 kcal/mol
Anti-antiterminator: Size=56 nt. Delta G=-15.51 kcal/mol
Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator
structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case
GAGGGCCCGGCGACAACGTCGTGATCCAGTCGTTGCTCGCCCATGCGAGCTTCCACGC
CGGCACGCTGATCTGAggccgacgatcgcggtcgcccggcgatcgtgtgttttgcctgtcgggcgcagcccggatggcgcgaaaggca
atcgcgggcccgcgaatcgatgcggtcgtcccggattaggccgcgcgccacccgggctacggcgctttcacggccatgtgagtcctgatactctgcacgc
cgtcgtggctcggcgggccatgccatcgatcgttgaaccagagctgccgagaggATG
bll3108
Gene: bll3108 GI: 27378219 BI number: bll3108 GOG: ------- Description:
CA
C T
CG
GC
CG
TA
CG
GC
| T
| T
| C
T C
TA
GC
CG
| C
| C gc
| G g c
| G A g
| C G a
| A T c
| C Cg cg
TG Ta t c
GC At gc
AT Gc gc
C | T | | g
CG Cg cg
TA Gc gc
AT Cg cg
GC A | ta
T | Cg at
GT Gt gc
CG Gc cg
TA Cg at
gtgttttgcctgtcgggcgcagcccggatggcgcgaaaggcaatcgcgggcccgcgaatcgatgcggtcgtcccggattaggccgcgcgccacccgggctacggcgctttcacggccatgtgagtcctgatactctgcacgccgtcgtggctcggcgggccatgccatcgatcgttgaaccagagctgccgagaggATG
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