                                                                        Gene putatively regulated by attenuation in B_japonicum

                                                                        Characteristics of the secondary structures
Terminator:    Distance to gene:187 nt.     Distance to run of Ts=0 nt.   Size=18 nt.     Delta G= -9.10 kcal/mol
Antiterminator: Size=47 nt.     Delta G=-22.80 kcal/mol
Anti-antiterminator:   Size=44 nt.     Delta G=-23.70 kcal/mol

                                                                        Nomenclature/Definitions
Bases shared by the antitermination and termination structures are shown in red
Bases shared by the anti-antitermination and antitermination structures are shown in green
The sequences of the anti-antiterminator, antiterminator and terminator structures are underlined
Coding regions are in CAPS, non-coding regions are in lower case

GATCGCCTTGGAGACTGCTTTGGAGGCTGCCGTGGGGCGTTTTGCCGCGACGCGGGCA
GGCTTCCTGGCAGGGGTACGGGGGCCTTTGCCGGCCGGGCTTTTGCTTGGTTTTTTGG
GCATgtccgaagttcctgagaatgcagccttatcgggcctgacggcgcgccgcaaggtgaccaaaaggacggtctggcagcgttgcaattggggcgg
tggccgctatagtccgcgcgaatttgaccgagccggtcgcctttgagggcctgaccggctttccccgttgtcacaaggatcgtccgaATG

    bll4736 Gene: bll4736     GI: 27379847     BI number: bll4736     GOG: COG1862     Description: preprotein tranlocase protei            GG           C  G           A  G TT        TG T  G       GC T  C       GC GC        GT CG        GT GC        AT G  G       CG G  A       GC GC        GC TG       T  | GC       C  | |  G      C  | CG       T  | CG        TG GC        CG        TT TA        GC       T  T |  G       GC        CG CG       |  G       GC GC       A  G       GT GT        CG        GT AT        GC        CG GC        GT        CG GC        GT        GT                         TTTTTGGGCATgtccgaagttcctgagaatgcagccttatcgggcctgacggcgcgccgcaaggtgaccaaaaggacggtctggcagcgttgcaattggggcggtggccgctatagtccgcgcgaatttgaccgagccggtcgcctttgagggcctgaccggctttccccgttgtcacaaggatcgtccgaATG                                                                         Orthologous genes that have a predicted attenuator, grouped in COG families [U] COG1862 Preprotein translocase subunit YajC ... can be seen here     ..................................................................................................................